Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.53□□□□□ -0.08
HOXA1P49639 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HOXA1P49639 AL355355.2-201ENST00000442321 338 ntBASIC14.53□□□□□ -0.08
HOXA1P49639 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 GRAP-204ENST00000573099 846 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXA1P49639 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
HOXA1P49639 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXA1P49639 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 AC024909.3-201ENST00000611513 2257 ntBASIC14.53□□□□□ -0.08
HOXA1P49639 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
HOXA1P49639 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXA1P49639 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXA1P49639 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXA1P49639 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXA1P49639 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXA1P49639 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXA1P49639 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXA1P49639 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HOXA1P49639 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.52□□□□□ -0.09
HOXA1P49639 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HOXA1P49639 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXA1P49639 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXA1P49639 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXA1P49639 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.09
HOXA1P49639 AC132872.4-202ENST00000622924 2756 ntBASIC14.52□□□□□ -0.09
HOXA1P49639 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXA1P49639 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HOXA1P49639 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXA1P49639 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HOXA1P49639 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
HOXA1P49639 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 PEX7-202ENST00000367756 680 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXA1P49639 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXA1P49639 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXA1P49639 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXA1P49639 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
HOXA1P49639 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXA1P49639 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms