Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
CUX1P39880 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX1P39880 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX1P39880 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CUX1P39880 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC28.85■■■□□ 2.21
CUX1P39880 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX1P39880 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX1P39880 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC28.84■■■□□ 2.21
CUX1P39880 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC28.84■■■□□ 2.21
CUX1P39880 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX1P39880 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC28.84■■■□□ 2.21
CUX1P39880 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC28.84■■■□□ 2.21
CUX1P39880 AC069120.2-201ENST00000524091 540 ntBASIC28.84■■■□□ 2.21
CUX1P39880 SPDYE22P-201ENST00000582158 798 ntBASIC28.84■■■□□ 2.21
CUX1P39880 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC28.84■■■□□ 2.21
CUX1P39880 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC28.84■■■□□ 2.21
CUX1P39880 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC28.84■■■□□ 2.21
CUX1P39880 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
CUX1P39880 GRAP-202ENST00000395635 834 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX1P39880 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC28.84■■■□□ 2.21
CUX1P39880 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX1P39880 AP000842.3-202ENST00000569238 1080 ntBASIC28.84■■■□□ 2.21
CUX1P39880 CECR7-204ENST00000609932 568 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX1P39880 SLC22A20-204ENST00000530038 1673 ntBASIC28.84■■■□□ 2.21
CUX1P39880 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX1P39880 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX1P39880 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC28.83■■■□□ 2.21
CUX1P39880 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC28.83■■■□□ 2.21
CUX1P39880 TDG-209ENST00000544861 1387 ntTSL 2 BASIC28.83■■■□□ 2.21
CUX1P39880 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
CUX1P39880 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC28.83■■■□□ 2.21
CUX1P39880 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 RNU1-129P-201ENST00000384064 167 ntBASIC28.83■■■□□ 2.21
CUX1P39880 TSSK5P-201ENST00000423978 907 ntBASIC28.83■■■□□ 2.21
CUX1P39880 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC28.83■■■□□ 2.21
CUX1P39880 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC28.83■■■□□ 2.21
CUX1P39880 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC28.83■■■□□ 2.21
CUX1P39880 AC097493.3-201ENST00000509725 367 ntBASIC28.83■■■□□ 2.21
CUX1P39880 ALG1L8P-201ENST00000533887 760 ntBASIC28.83■■■□□ 2.21
CUX1P39880 U1.21-201ENST00000580816 167 ntBASIC28.83■■■□□ 2.21
CUX1P39880 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
CUX1P39880 AC063926.2-201ENST00000623766 1308 ntBASIC28.83■■■□□ 2.21
CUX1P39880 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CUX1P39880 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
CUX1P39880 AC093503.3-201ENST00000624917 2352 ntBASIC28.82■■■□□ 2.2
CUX1P39880 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC28.82■■■□□ 2.2
CUX1P39880 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 WASH6P-202ENST00000359512 1437 ntBASIC28.82■■■□□ 2.2
CUX1P39880 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC28.82■■■□□ 2.2
CUX1P39880 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 UXT-AS1-201ENST00000590504 1525 ntBASIC28.82■■■□□ 2.2
CUX1P39880 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC28.82■■■□□ 2.2
CUX1P39880 GOLGA6L11P-201ENST00000417252 1298 ntBASIC28.82■■■□□ 2.2
CUX1P39880 SERBP1P5-201ENST00000510079 1181 ntBASIC28.82■■■□□ 2.2
CUX1P39880 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC28.82■■■□□ 2.2
CUX1P39880 MIR3909-201ENST00000579518 119 ntBASIC28.82■■■□□ 2.2
CUX1P39880 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC28.82■■■□□ 2.2
CUX1P39880 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC28.82■■■□□ 2.2
CUX1P39880 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC28.82■■■□□ 2.2
CUX1P39880 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC28.82■■■□□ 2.2
CUX1P39880 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC28.81■■■□□ 2.2
CUX1P39880 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
CUX1P39880 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 SPDYE7P-202ENST00000420373 878 ntBASIC28.81■■■□□ 2.2
CUX1P39880 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 IGHV3-42-201ENST00000520410 361 ntBASIC28.81■■■□□ 2.2
CUX1P39880 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC28.81■■■□□ 2.2
CUX1P39880 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
CUX1P39880 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
CUX1P39880 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CUX1P39880 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms