Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC106886.1-201ENST00000568660 600 ntBASIC20.35■□□□□ 0.85
SCN4AP35499 AC008738.7-201ENST00000609744 511 ntBASIC20.35■□□□□ 0.85
SCN4AP35499 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
SCN4AP35499 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SCN4AP35499 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SCN4AP35499 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.35■□□□□ 0.85
SCN4AP35499 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SCN4AP35499 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 AC098614.1-201ENST00000368528 745 ntBASIC20.34■□□□□ 0.85
SCN4AP35499 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.34■□□□□ 0.85
SCN4AP35499 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.34■□□□□ 0.85
SCN4AP35499 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.34■□□□□ 0.85
SCN4AP35499 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.34■□□□□ 0.85
SCN4AP35499 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
SCN4AP35499 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.34■□□□□ 0.85
SCN4AP35499 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SCN4AP35499 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 DGCR5-201ENST00000399539 862 ntBASIC20.34■□□□□ 0.85
SCN4AP35499 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SCN4AP35499 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.34■□□□□ 0.85
SCN4AP35499 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SCN4AP35499 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.34■□□□□ 0.85
SCN4AP35499 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.34■□□□□ 0.85
SCN4AP35499 AL844908.2-201ENST00000609461 460 ntBASIC20.34■□□□□ 0.85
SCN4AP35499 AL391825.1-201ENST00000457671 1364 ntBASIC20.34■□□□□ 0.85
SCN4AP35499 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SCN4AP35499 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.33■□□□□ 0.85
SCN4AP35499 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SCN4AP35499 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.33■□□□□ 0.85
SCN4AP35499 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.33■□□□□ 0.85
SCN4AP35499 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.33■□□□□ 0.85
SCN4AP35499 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.33■□□□□ 0.85
SCN4AP35499 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.33■□□□□ 0.85
SCN4AP35499 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.33■□□□□ 0.85
SCN4AP35499 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 AL162274.1-201ENST00000617191 1098 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 AL033527.4-201ENST00000641026 673 ntBASIC20.33■□□□□ 0.85
SCN4AP35499 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.33■□□□□ 0.84
SCN4AP35499 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SCN4AP35499 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SCN4AP35499 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SCN4AP35499 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SCN4AP35499 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
SCN4AP35499 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.32■□□□□ 0.84
SCN4AP35499 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
SCN4AP35499 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.32■□□□□ 0.84
SCN4AP35499 TEX28P1-201ENST00000613479 1221 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 TEX28P2-201ENST00000617764 1221 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.32■□□□□ 0.84
SCN4AP35499 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 AL031598.1-201ENST00000561511 1773 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SCN4AP35499 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SCN4AP35499 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 AL512384.1-201ENST00000406683 331 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 AC112492.5-201ENST00000421897 457 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCN4AP35499 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.32■□□□□ 0.84
SCN4AP35499 AC105233.2-201ENST00000523697 349 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 AF228730.5-201ENST00000530288 346 ntBASIC20.32■□□□□ 0.84
SCN4AP35499 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SCN4AP35499 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.32■□□□□ 0.84
SCN4AP35499 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms