Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFC4P35249 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.76■■□□□ 1.07
RFC4P35249 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFC4P35249 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.76■■□□□ 1.07
RFC4P35249 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RFC4P35249 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RFC4P35249 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.76■■□□□ 1.07
RFC4P35249 REXO1L9P-201ENST00000604264 2108 ntBASIC21.76■■□□□ 1.07
RFC4P35249 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RFC4P35249 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.75■■□□□ 1.07
RFC4P35249 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
RFC4P35249 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.75■■□□□ 1.07
RFC4P35249 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.75■■□□□ 1.07
RFC4P35249 GK-202ENST00000378941 458 ntTSL 3 BASIC21.75■■□□□ 1.07
RFC4P35249 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.75■■□□□ 1.07
RFC4P35249 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.75■■□□□ 1.07
RFC4P35249 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
RFC4P35249 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.75■■□□□ 1.07
RFC4P35249 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.75■■□□□ 1.07
RFC4P35249 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.75■■□□□ 1.07
RFC4P35249 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
RFC4P35249 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RFC4P35249 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.75■■□□□ 1.07
RFC4P35249 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 FO538757.1-201ENST00000623083 1397 ntBASIC21.74■■□□□ 1.07
RFC4P35249 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.74■■□□□ 1.07
RFC4P35249 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.74■■□□□ 1.07
RFC4P35249 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
RFC4P35249 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.74■■□□□ 1.07
RFC4P35249 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
RFC4P35249 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.74■■□□□ 1.07
RFC4P35249 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.74■■□□□ 1.07
RFC4P35249 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.74■■□□□ 1.07
RFC4P35249 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.74■■□□□ 1.07
RFC4P35249 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.74■■□□□ 1.07
RFC4P35249 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
RFC4P35249 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.74■■□□□ 1.07
RFC4P35249 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFC4P35249 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
RFC4P35249 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.73■■□□□ 1.07
RFC4P35249 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RFC4P35249 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
RFC4P35249 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.73■■□□□ 1.07
RFC4P35249 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.73■■□□□ 1.07
RFC4P35249 SPCS2P4-201ENST00000436160 681 ntBASIC21.73■■□□□ 1.07
RFC4P35249 HLA-J-202ENST00000469281 1241 ntBASIC21.73■■□□□ 1.07
RFC4P35249 AC107918.2-201ENST00000530817 355 ntBASIC21.73■■□□□ 1.07
RFC4P35249 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.73■■□□□ 1.07
RFC4P35249 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.73■■□□□ 1.07
RFC4P35249 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.73■■□□□ 1.07
RFC4P35249 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
RFC4P35249 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.73■■□□□ 1.07
RFC4P35249 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.73■■□□□ 1.07
RFC4P35249 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
RFC4P35249 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFC4P35249 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFC4P35249 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.72■■□□□ 1.07
RFC4P35249 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RFC4P35249 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
RFC4P35249 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFC4P35249 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.72■■□□□ 1.07
RFC4P35249 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RFC4P35249 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
RFC4P35249 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.72■■□□□ 1.07
RFC4P35249 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.72■■□□□ 1.07
RFC4P35249 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RFC4P35249 TREML5P-201ENST00000421694 576 ntBASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms