Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.32■□□□□ 0.52
PDGFRAP16234 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDGFRAP16234 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDGFRAP16234 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PDGFRAP16234 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDGFRAP16234 AC016396.2-201ENST00000562575 1417 ntBASIC18.32■□□□□ 0.52
PDGFRAP16234 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
PDGFRAP16234 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.31■□□□□ 0.52
PDGFRAP16234 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.31■□□□□ 0.52
PDGFRAP16234 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.31■□□□□ 0.52
PDGFRAP16234 LINC01711-201ENST00000598340 967 ntBASIC18.31■□□□□ 0.52
PDGFRAP16234 AL591684.3-201ENST00000605187 298 ntBASIC18.31■□□□□ 0.52
PDGFRAP16234 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.31■□□□□ 0.52
PDGFRAP16234 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.31■□□□□ 0.52
PDGFRAP16234 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDGFRAP16234 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PDGFRAP16234 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.3■□□□□ 0.52
PDGFRAP16234 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 TPM4P1-201ENST00000436100 807 ntBASIC18.3■□□□□ 0.52
PDGFRAP16234 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.3■□□□□ 0.52
PDGFRAP16234 AC073592.5-201ENST00000624854 528 ntBASIC18.3■□□□□ 0.52
PDGFRAP16234 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 AC046185.3-201ENST00000623228 1824 ntBASIC18.3■□□□□ 0.52
PDGFRAP16234 AC132938.5-201ENST00000624980 1813 ntBASIC18.3■□□□□ 0.52
PDGFRAP16234 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.3■□□□□ 0.52
PDGFRAP16234 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
PDGFRAP16234 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDGFRAP16234 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFRAP16234 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFRAP16234 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.29■□□□□ 0.52
PDGFRAP16234 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDGFRAP16234 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms