Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
TPM1P09493 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.25■□□□□ 0.67
TPM1P09493 KRT89P-201ENST00000620027 1478 ntBASIC19.25■□□□□ 0.67
TPM1P09493 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.25■□□□□ 0.67
TPM1P09493 TSPY7P-201ENST00000431358 1114 ntBASIC19.25■□□□□ 0.67
TPM1P09493 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.25■□□□□ 0.67
TPM1P09493 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 AC024563.2-201ENST00000603282 481 ntBASIC19.25■□□□□ 0.67
TPM1P09493 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 DOC2GP-204ENST00000639052 2548 ntBASIC19.25■□□□□ 0.67
TPM1P09493 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.25■□□□□ 0.67
TPM1P09493 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TPM1P09493 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TPM1P09493 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TPM1P09493 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.24■□□□□ 0.67
TPM1P09493 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TPM1P09493 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TPM1P09493 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TPM1P09493 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.24■□□□□ 0.67
TPM1P09493 AC034232.1-201ENST00000506026 1064 ntBASIC19.24■□□□□ 0.67
TPM1P09493 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.24■□□□□ 0.67
TPM1P09493 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
TPM1P09493 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.24■□□□□ 0.67
TPM1P09493 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.24■□□□□ 0.67
TPM1P09493 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TPM1P09493 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
TPM1P09493 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM1P09493 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TPM1P09493 PCDH8P1-201ENST00000428983 2773 ntBASIC19.23■□□□□ 0.67
TPM1P09493 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM1P09493 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM1P09493 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.23■□□□□ 0.67
TPM1P09493 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM1P09493 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.23■□□□□ 0.67
TPM1P09493 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.23■□□□□ 0.67
TPM1P09493 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM1P09493 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 LINC01311-201ENST00000565162 1445 ntBASIC19.23■□□□□ 0.67
TPM1P09493 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms