Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL3A1P02461 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
COL3A1P02461 RPP21-221ENST00000428040 594 ntTSL 2 BASIC22.84■■□□□ 1.25
COL3A1P02461 GPX1P2-201ENST00000429271 606 ntBASIC22.84■■□□□ 1.25
COL3A1P02461 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL3A1P02461 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.84■■□□□ 1.25
COL3A1P02461 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.84■■□□□ 1.25
COL3A1P02461 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC22.84■■□□□ 1.25
COL3A1P02461 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.84■■□□□ 1.25
COL3A1P02461 COX5A-206ENST00000568783 571 ntTSL 3 BASIC22.84■■□□□ 1.25
COL3A1P02461 AC002347.1-201ENST00000569543 541 ntBASIC22.84■■□□□ 1.25
COL3A1P02461 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC22.84■■□□□ 1.25
COL3A1P02461 HOTTIP_1.1-201ENST00000620415 57 ntBASIC22.84■■□□□ 1.25
COL3A1P02461 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.84■■□□□ 1.25
COL3A1P02461 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL3A1P02461 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL3A1P02461 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
COL3A1P02461 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.83■■□□□ 1.25
COL3A1P02461 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
COL3A1P02461 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC22.83■■□□□ 1.25
COL3A1P02461 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
COL3A1P02461 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.83■■□□□ 1.25
COL3A1P02461 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.83■■□□□ 1.25
COL3A1P02461 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC22.83■■□□□ 1.25
COL3A1P02461 KRT19P2-202ENST00000557173 1012 ntBASIC22.83■■□□□ 1.25
COL3A1P02461 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC22.83■■□□□ 1.25
COL3A1P02461 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
COL3A1P02461 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC22.83■■□□□ 1.25
COL3A1P02461 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL3A1P02461 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL3A1P02461 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
COL3A1P02461 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 PMP22-202ENST00000395936 816 ntTSL 3 BASIC22.82■■□□□ 1.24
COL3A1P02461 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC22.82■■□□□ 1.24
COL3A1P02461 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 MAL2-202ENST00000531508 892 ntTSL 3 BASIC22.82■■□□□ 1.24
COL3A1P02461 AC096734.2-201ENST00000562054 433 ntBASIC22.82■■□□□ 1.24
COL3A1P02461 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 STX3-203ENST00000529177 1571 ntTSL 2 BASIC22.82■■□□□ 1.24
COL3A1P02461 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 AC139713.2-201ENST00000641328 2723 ntBASIC22.82■■□□□ 1.24
COL3A1P02461 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.82■■□□□ 1.24
COL3A1P02461 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC22.82■■□□□ 1.24
COL3A1P02461 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL3A1P02461 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC22.81■■□□□ 1.24
COL3A1P02461 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 AC141586.5-201ENST00000624546 2050 ntBASIC22.81■■□□□ 1.24
COL3A1P02461 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.81■■□□□ 1.24
COL3A1P02461 CXCL1P1-201ENST00000502804 216 ntBASIC22.81■■□□□ 1.24
COL3A1P02461 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC22.81■■□□□ 1.24
COL3A1P02461 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC22.81■■□□□ 1.24
COL3A1P02461 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL3A1P02461 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
COL3A1P02461 AL645608.8-201ENST00000606034 2086 ntBASIC22.81■■□□□ 1.24
COL3A1P02461 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC22.8■■□□□ 1.24
COL3A1P02461 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.8■■□□□ 1.24
COL3A1P02461 MCCD1P2-201ENST00000423228 335 ntBASIC22.8■■□□□ 1.24
COL3A1P02461 ADH5P3-201ENST00000433842 1137 ntBASIC22.8■■□□□ 1.24
COL3A1P02461 FIS1-203ENST00000442303 631 ntTSL 3 BASIC22.8■■□□□ 1.24
COL3A1P02461 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC22.8■■□□□ 1.24
COL3A1P02461 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC22.8■■□□□ 1.24
COL3A1P02461 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC22.8■■□□□ 1.24
COL3A1P02461 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.8■■□□□ 1.24
COL3A1P02461 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC22.8■■□□□ 1.24
COL3A1P02461 LINC02012-201ENST00000608206 1725 ntBASIC22.8■■□□□ 1.24
COL3A1P02461 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.8■■□□□ 1.24
COL3A1P02461 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
COL3A1P02461 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms