Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 HARS-201ENST00000307633 1780 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC13.36□□□□□ -0.27
COL6A5A8TX70 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL6A5A8TX70 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 AC087163.2-201ENST00000457299 853 ntBASIC13.35□□□□□ -0.27
COL6A5A8TX70 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 AC109635.5-201ENST00000533593 962 ntBASIC13.35□□□□□ -0.27
COL6A5A8TX70 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 RN7SL219P-201ENST00000582872 296 ntBASIC13.35□□□□□ -0.27
COL6A5A8TX70 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 TEX28P1-201ENST00000613479 1221 ntBASIC13.35□□□□□ -0.27
COL6A5A8TX70 TEX28P2-201ENST00000617764 1221 ntBASIC13.35□□□□□ -0.27
COL6A5A8TX70 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL6A5A8TX70 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A5A8TX70 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 ZNF890P-202ENST00000530367 1156 ntBASIC13.34□□□□□ -0.27
COL6A5A8TX70 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 MIR4515-201ENST00000584082 81 ntBASIC13.34□□□□□ -0.27
COL6A5A8TX70 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 AC018529.1-201ENST00000613063 361 ntBASIC13.34□□□□□ -0.27
COL6A5A8TX70 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 AP3S2-216ENST00000617003 1561 ntBASIC13.34□□□□□ -0.27
COL6A5A8TX70 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL6A5A8TX70 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A5A8TX70 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC13.33□□□□□ -0.27
COL6A5A8TX70 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.33□□□□□ -0.27
COL6A5A8TX70 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL6A5A8TX70 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.33□□□□□ -0.27
COL6A5A8TX70 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.33□□□□□ -0.27
COL6A5A8TX70 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms