Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 AC108860.2-201ENST00000562760 2183 ntBASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DRB4X5D2U9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 VENTXP7-201ENST00000475503 772 ntBASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 AC011840.4-201ENST00000578471 627 ntBASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DRB4X5D2U9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 BX276092.7-203ENST00000637198 1536 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 MIR1224-201ENST00000408193 85 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AC096633.1-201ENST00000422446 749 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AC246785.2-201ENST00000432512 513 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AL445228.2-201ENST00000605589 952 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AC091076.1-201ENST00000610741 619 ntBASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DRB4X5D2U9 NKILA-202ENST00000614771 2598 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms