Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 HBZP1-201ENST00000354915 429 ntBASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ZNF444P1-201ENST00000559497 298 ntBASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC39Q9UFE4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 AL596257.1-201ENST00000641463 2694 ntBASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 RCN1P1-201ENST00000400413 996 ntBASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 KRT18P65-201ENST00000439811 1286 ntBASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 AC063952.2-201ENST00000498792 1227 ntBASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC39Q9UFE4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 AP003733.1-201ENST00000491725 852 ntBASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 RN7SL850P-201ENST00000579959 291 ntBASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 AC004263.2-201ENST00000617183 678 ntBASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC39Q9UFE4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms