Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.48■□□□□ 0.07
MMP28Q9H239 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 AC096733.2-201ENST00000609937 1394 ntBASIC15.48■□□□□ 0.07
MMP28Q9H239 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.48■□□□□ 0.07
MMP28Q9H239 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
MMP28Q9H239 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
MMP28Q9H239 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.47■□□□□ 0.07
MMP28Q9H239 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
MMP28Q9H239 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.47■□□□□ 0.07
MMP28Q9H239 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.47■□□□□ 0.07
MMP28Q9H239 SLC25A1P4-201ENST00000567977 778 ntBASIC15.47■□□□□ 0.07
MMP28Q9H239 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.47■□□□□ 0.07
MMP28Q9H239 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.47■□□□□ 0.07
MMP28Q9H239 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MMP28Q9H239 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MMP28Q9H239 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
MMP28Q9H239 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
MMP28Q9H239 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
MMP28Q9H239 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC099343.3-201ENST00000605834 2503 ntBASIC15.46■□□□□ 0.07
MMP28Q9H239 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
MMP28Q9H239 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.46■□□□□ 0.07
MMP28Q9H239 UNC93B2-201ENST00000285383 730 ntBASIC15.46■□□□□ 0.07
MMP28Q9H239 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.46■□□□□ 0.07
MMP28Q9H239 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.46■□□□□ 0.07
MMP28Q9H239 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.46■□□□□ 0.07
MMP28Q9H239 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC097488.1-201ENST00000507834 756 ntBASIC15.46■□□□□ 0.07
MMP28Q9H239 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.46■□□□□ 0.07
MMP28Q9H239 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.46■□□□□ 0.07
MMP28Q9H239 CYGB-204ENST00000589342 815 ntTSL 3 BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.46■□□□□ 0.07
MMP28Q9H239 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
MMP28Q9H239 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.46■□□□□ 0.07
MMP28Q9H239 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MMP28Q9H239 AC005915.1-201ENST00000624912 2018 ntBASIC15.46■□□□□ 0.07
MMP28Q9H239 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
MMP28Q9H239 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
MMP28Q9H239 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
MMP28Q9H239 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.45■□□□□ 0.06
MMP28Q9H239 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
MMP28Q9H239 DBET-201ENST00000630918 3363 ntBASIC15.45■□□□□ 0.06
MMP28Q9H239 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
MMP28Q9H239 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
MMP28Q9H239 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
MMP28Q9H239 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
MMP28Q9H239 MFAP1P1-201ENST00000442257 1255 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms