Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC140113.2-201ENST00000604370 208 ntBASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AC139530.3-201ENST00000620344 690 ntBASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AC004706.3-202ENST00000621574 984 ntBASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 AC100803.2-201ENST00000562459 1963 ntBASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.13■□□□□ 0.65
TRAIPQ9BWF2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 AC136632.2-201ENST00000512891 861 ntBASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAIPQ9BWF2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 MED15P5-201ENST00000423150 992 ntBASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 SLC25A6P5-201ENST00000435663 894 ntBASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 STK25P1-201ENST00000585406 838 ntBASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 MIR1199-201ENST00000621445 119 ntBASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAIPQ9BWF2 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms