Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.04■□□□□ 0.48
CDX2Q99626 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.04■□□□□ 0.48
CDX2Q99626 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.04■□□□□ 0.48
CDX2Q99626 AC007967.4-201ENST00000614700 386 ntBASIC18.04■□□□□ 0.48
CDX2Q99626 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.04■□□□□ 0.48
CDX2Q99626 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CDX2Q99626 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX2Q99626 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX2Q99626 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX2Q99626 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX2Q99626 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
CDX2Q99626 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CDX2Q99626 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CDX2Q99626 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.03■□□□□ 0.48
CDX2Q99626 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.03■□□□□ 0.48
CDX2Q99626 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.03■□□□□ 0.48
CDX2Q99626 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.03■□□□□ 0.48
CDX2Q99626 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CDX2Q99626 SNX29P1-201ENST00000548357 1007 ntBASIC18.03■□□□□ 0.48
CDX2Q99626 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.03■□□□□ 0.48
CDX2Q99626 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.03■□□□□ 0.48
CDX2Q99626 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.03■□□□□ 0.48
CDX2Q99626 AL844908.2-201ENST00000609461 460 ntBASIC18.03■□□□□ 0.48
CDX2Q99626 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.03■□□□□ 0.48
CDX2Q99626 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX2Q99626 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX2Q99626 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CDX2Q99626 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.02■□□□□ 0.48
CDX2Q99626 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 MYCLP1-201ENST00000372451 1075 ntBASIC18.02■□□□□ 0.48
CDX2Q99626 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDX2Q99626 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 BNIP3P42-201ENST00000454982 569 ntBASIC18.02■□□□□ 0.48
CDX2Q99626 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX2Q99626 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.02■□□□□ 0.48
CDX2Q99626 BNIP3P29-201ENST00000598302 571 ntBASIC18.02■□□□□ 0.48
CDX2Q99626 AC011447.5-201ENST00000616168 564 ntBASIC18.02■□□□□ 0.48
CDX2Q99626 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDX2Q99626 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CDX2Q99626 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.01■□□□□ 0.47
CDX2Q99626 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 AC002558.1-201ENST00000488906 803 ntBASIC18.01■□□□□ 0.47
CDX2Q99626 RARRES2P9-201ENST00000565168 469 ntBASIC18.01■□□□□ 0.47
CDX2Q99626 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CDX2Q99626 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms