Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 COX11P1-201ENST00000489116 835 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 AP003733.1-201ENST00000491725 852 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 AL441883.1-201ENST00000566170 1045 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 AC145285.6-201ENST00000604632 637 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 AC105020.1-201ENST00000435356 2205 ntBASIC18.86■□□□□ 0.61
CCDC42Q96M95 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC42Q96M95 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC42Q96M95 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AL353692.3-201ENST00000407031 1396 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC096633.1-201ENST00000422446 749 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 SPDYE15P-201ENST00000424157 909 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 LIN28AP1-201ENST00000429574 405 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC068472.1-201ENST00000474589 881 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC046185.3-201ENST00000623228 1824 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 LINC02012-201ENST00000608206 1725 ntBASIC18.85■□□□□ 0.61
CCDC42Q96M95 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC42Q96M95 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC42Q96M95 AC005915.1-201ENST00000624912 2018 ntBASIC18.84■□□□□ 0.61
CCDC42Q96M95 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 STARP1-201ENST00000397973 869 ntBASIC18.84■□□□□ 0.61
CCDC42Q96M95 SLC25A3P1-201ENST00000443844 931 ntBASIC18.84■□□□□ 0.61
CCDC42Q96M95 AC002558.1-201ENST00000488906 803 ntBASIC18.84■□□□□ 0.61
CCDC42Q96M95 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 ZNF444P1-201ENST00000559497 298 ntBASIC18.84■□□□□ 0.61
CCDC42Q96M95 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
CCDC42Q96M95 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC42Q96M95 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms