Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 AC012615.1-201ENST00000565797 1299 ntBASIC16.77■□□□□ 0.28
VMP1Q96GC9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.77■□□□□ 0.27
VMP1Q96GC9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
VMP1Q96GC9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VMP1Q96GC9 AC093010.1-201ENST00000473625 1624 ntBASIC16.77■□□□□ 0.27
VMP1Q96GC9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
VMP1Q96GC9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VMP1Q96GC9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VMP1Q96GC9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.27
VMP1Q96GC9 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.77■□□□□ 0.27
VMP1Q96GC9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 AC104819.1-201ENST00000504587 486 ntBASIC16.76■□□□□ 0.27
VMP1Q96GC9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 CLEC4GP1-201ENST00000596555 870 ntBASIC16.76■□□□□ 0.27
VMP1Q96GC9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.76■□□□□ 0.27
VMP1Q96GC9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
VMP1Q96GC9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VMP1Q96GC9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 AC068472.1-201ENST00000474589 881 ntBASIC16.75■□□□□ 0.27
VMP1Q96GC9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 PRELID1P1-202ENST00000567272 903 ntBASIC16.75■□□□□ 0.27
VMP1Q96GC9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 FER1L4-210ENST00000615531 5998 ntBASIC16.75■□□□□ 0.27
VMP1Q96GC9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VMP1Q96GC9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.75■□□□□ 0.27
VMP1Q96GC9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 AL162727.3-201ENST00000635661 2787 ntBASIC16.74■□□□□ 0.27
VMP1Q96GC9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms