Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 HCG11-201ENST00000411553 5696 ntBASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 PCDHAC2-203ENST00000615316 3011 ntBASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC1BQ8NDV3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 AC129492.6-201ENST00000611383 1305 ntBASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 AC009336.1-201ENST00000608941 1553 ntBASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 RAB43P1-201ENST00000561790 589 ntBASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 AFG3L1P-217ENST00000557444 2447 ntBASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SMC1BQ8NDV3 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AL590787.1-201ENST00000568856 1315 ntBASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AL512384.1-201ENST00000406683 331 ntBASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AC112492.5-201ENST00000421897 457 ntBASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 KRT17P8-201ENST00000540749 863 ntBASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SMC1BQ8NDV3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.53■□□□□ 0.88
SMC1BQ8NDV3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms