Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 FAAHP1-202ENST00000446499 1238 ntBASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 SCARNA2-201ENST00000458748 420 ntBASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 NKAPP1-205ENST00000585790 367 ntBASIC17.9■□□□□ 0.46
RTL3Q8N8U3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RTL3Q8N8U3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.89■□□□□ 0.46
RTL3Q8N8U3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
RTL3Q8N8U3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RTL3Q8N8U3 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
RTL3Q8N8U3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
RTL3Q8N8U3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 CROCCP2-202ENST00000412962 2773 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 PRYP5-201ENST00000451909 266 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 BX005266.1-201ENST00000473402 457 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 SART3-203ENST00000546611 1184 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 AL121912.1-201ENST00000603683 238 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 AL135999.2-201ENST00000622438 1686 ntBASIC17.89■□□□□ 0.45
RTL3Q8N8U3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RTL3Q8N8U3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 AC004817.3-201ENST00000602957 2129 ntBASIC17.88■□□□□ 0.45
RTL3Q8N8U3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 AL022326.1-202ENST00000641533 845 ntBASIC17.88■□□□□ 0.45
RTL3Q8N8U3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RTL3Q8N8U3 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RTL3Q8N8U3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms