Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 AC046185.3-201ENST00000623228 1824 ntBASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 DOC2GP-204ENST00000639052 2548 ntBASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NUDCD3Q8IVD9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 MIR4785-201ENST00000585005 73 ntBASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 AL139327.4-201ENST00000612362 153 ntBASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 LINC02012-201ENST00000608206 1725 ntBASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 KRT89P-201ENST00000620027 1478 ntBASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NUDCD3Q8IVD9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 AL603756.1-201ENST00000606511 2163 ntBASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NUDCD3Q8IVD9 AC008894.3-201ENST00000624324 3103 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms