Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 KRT18P28-201ENST00000453838 1332 ntBASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SH3RF1Q7Z6J0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 AC125634.1-201ENST00000438758 1403 ntBASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 AC105339.3-201ENST00000560043 636 ntBASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 AC116407.2-201ENST00000613639 860 ntBASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.97■□□□□ 0.79
SH3RF1Q7Z6J0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 MTCL1P1-201ENST00000446207 792 ntBASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AC112698.1-201ENST00000510299 916 ntBASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AC002347.1-201ENST00000569543 541 ntBASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AL596442.2-201ENST00000610240 980 ntBASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SH3RF1Q7Z6J0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
SH3RF1Q7Z6J0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 NKAPP1-205ENST00000585790 367 ntBASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 MTDHP4-201ENST00000600287 670 ntBASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SH3RF1Q7Z6J0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 AC211486.1-202ENST00000416371 468 ntBASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 METTL21AP1-201ENST00000438852 635 ntBASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 AC009947.1-201ENST00000444350 727 ntBASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 AC211476.1-201ENST00000503899 468 ntBASIC19.94■□□□□ 0.78
SH3RF1Q7Z6J0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms