Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.17■□□□□ 0.34
PKNOX1P55347 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.17■□□□□ 0.34
PKNOX1P55347 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 GPR32P1-201ENST00000601788 811 ntBASIC17.17■□□□□ 0.34
PKNOX1P55347 AC133561.5-201ENST00000635547 218 ntBASIC17.17■□□□□ 0.34
PKNOX1P55347 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
PKNOX1P55347 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AC105020.1-201ENST00000435356 2205 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.16■□□□□ 0.34
PKNOX1P55347 AC073508.3-201ENST00000619697 1419 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 PCDHA14-201ENST00000506751 2298 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 AGGF1P2-201ENST00000426656 2106 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 MTCL1P1-201ENST00000446207 792 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 HOMER2P1-201ENST00000455653 964 ntBASIC17.16■□□□□ 0.34
PKNOX1P55347 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.16■□□□□ 0.34
PKNOX1P55347 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PKNOX1P55347 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PKNOX1P55347 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.16■□□□□ 0.34
PKNOX1P55347 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PKNOX1P55347 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
PKNOX1P55347 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 AC117947.1-201ENST00000427448 529 ntBASIC17.15■□□□□ 0.34
PKNOX1P55347 AC068472.1-201ENST00000474589 881 ntBASIC17.15■□□□□ 0.34
PKNOX1P55347 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.15■□□□□ 0.34
PKNOX1P55347 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
PKNOX1P55347 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 AC073912.3-201ENST00000624414 853 ntBASIC17.15■□□□□ 0.34
PKNOX1P55347 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.15■□□□□ 0.34
PKNOX1P55347 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.15■□□□□ 0.34
PKNOX1P55347 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PKNOX1P55347 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PKNOX1P55347 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PKNOX1P55347 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.14■□□□□ 0.33
PKNOX1P55347 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PKNOX1P55347 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms