Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PAUPAR-201ENST00000630360 2965 ntBASIC13.17□□□□□ -0.3
FOXA3P55318 AL031985.4-201ENST00000642138 673 ntBASIC13.17□□□□□ -0.3
FOXA3P55318 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA3P55318 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA3P55318 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
FOXA3P55318 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
FOXA3P55318 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
FOXA3P55318 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA3P55318 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 DDX43P3-201ENST00000441064 443 ntBASIC13.16□□□□□ -0.3
FOXA3P55318 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
FOXA3P55318 PPP1R14BP3-201ENST00000509033 445 ntBASIC13.16□□□□□ -0.3
FOXA3P55318 DLX3-202ENST00000512495 834 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA3P55318 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 AL023875.1-201ENST00000640777 796 ntBASIC13.16□□□□□ -0.3
FOXA3P55318 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.16□□□□□ -0.3
FOXA3P55318 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA3P55318 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
FOXA3P55318 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA3P55318 AC092850.2-201ENST00000623821 2697 ntBASIC13.16□□□□□ -0.3
FOXA3P55318 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 MST1L-201ENST00000442552 2185 ntBASIC13.15□□□□□ -0.3
FOXA3P55318 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 NCF1B-203ENST00000435988 1254 ntBASIC13.15□□□□□ -0.3
FOXA3P55318 RPS2P4-201ENST00000476944 856 ntBASIC13.15□□□□□ -0.3
FOXA3P55318 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.15□□□□□ -0.3
FOXA3P55318 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 AC233263.1-201ENST00000578059 224 ntBASIC13.15□□□□□ -0.3
FOXA3P55318 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA3P55318 AC008403.3-201ENST00000598924 454 ntBASIC13.15□□□□□ -0.3
FOXA3P55318 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms