Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BRCA1P38398 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.98■□□□□ 0.95
BRCA1P38398 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.98■□□□□ 0.95
BRCA1P38398 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.98■□□□□ 0.95
BRCA1P38398 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.98■□□□□ 0.95
BRCA1P38398 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
BRCA1P38398 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
BRCA1P38398 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
BRCA1P38398 AC142381.1-201ENST00000426099 345 ntBASIC20.97■□□□□ 0.95
BRCA1P38398 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.97■□□□□ 0.95
BRCA1P38398 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.97■□□□□ 0.95
BRCA1P38398 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.97■□□□□ 0.95
BRCA1P38398 AL033527.4-201ENST00000641026 673 ntBASIC20.97■□□□□ 0.95
BRCA1P38398 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.97■□□□□ 0.95
BRCA1P38398 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.97■□□□□ 0.95
BRCA1P38398 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BRCA1P38398 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.97■□□□□ 0.95
BRCA1P38398 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.96■□□□□ 0.95
BRCA1P38398 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.96■□□□□ 0.95
BRCA1P38398 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.96■□□□□ 0.95
BRCA1P38398 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.96■□□□□ 0.95
BRCA1P38398 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.96■□□□□ 0.95
BRCA1P38398 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.96■□□□□ 0.95
BRCA1P38398 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.96■□□□□ 0.95
BRCA1P38398 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
BRCA1P38398 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.96■□□□□ 0.95
BRCA1P38398 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.96■□□□□ 0.95
BRCA1P38398 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BRCA1P38398 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.96■□□□□ 0.95
BRCA1P38398 TEX28P1-201ENST00000613479 1221 ntBASIC20.96■□□□□ 0.95
BRCA1P38398 TEX28P2-201ENST00000617764 1221 ntBASIC20.96■□□□□ 0.95
BRCA1P38398 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
BRCA1P38398 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
BRCA1P38398 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.95■□□□□ 0.94
BRCA1P38398 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
BRCA1P38398 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
BRCA1P38398 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.95■□□□□ 0.94
BRCA1P38398 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
BRCA1P38398 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.95■□□□□ 0.94
BRCA1P38398 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.95■□□□□ 0.94
BRCA1P38398 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.95■□□□□ 0.94
BRCA1P38398 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.95■□□□□ 0.94
BRCA1P38398 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.95■□□□□ 0.94
BRCA1P38398 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BRCA1P38398 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
BRCA1P38398 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
BRCA1P38398 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.94■□□□□ 0.94
BRCA1P38398 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
BRCA1P38398 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.94■□□□□ 0.94
BRCA1P38398 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 AC138969.3-201ENST00000546612 1459 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 AC138932.2-201ENST00000548268 1459 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 AC126755.4-201ENST00000549796 1459 ntBASIC20.94■□□□□ 0.94
BRCA1P38398 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
BRCA1P38398 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.94■□□□□ 0.94
BRCA1P38398 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BRCA1P38398 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms