Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.97■□□□□ 0.79
SMARCA1P28370 ELK2BP-201ENST00000415014 1224 ntBASIC19.97■□□□□ 0.79
SMARCA1P28370 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.97■□□□□ 0.79
SMARCA1P28370 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.97■□□□□ 0.79
SMARCA1P28370 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.97■□□□□ 0.79
SMARCA1P28370 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCA1P28370 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SMARCA1P28370 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.96■□□□□ 0.79
SMARCA1P28370 AC145285.3-201ENST00000564603 959 ntBASIC19.96■□□□□ 0.79
SMARCA1P28370 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 AC008667.4-201ENST00000607370 168 ntBASIC19.96■□□□□ 0.79
SMARCA1P28370 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.96■□□□□ 0.79
SMARCA1P28370 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.96■□□□□ 0.79
SMARCA1P28370 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SMARCA1P28370 IL9RP2-201ENST00000423948 1312 ntBASIC19.96■□□□□ 0.79
SMARCA1P28370 AC020763.4-201ENST00000623414 4170 ntBASIC19.96■□□□□ 0.79
SMARCA1P28370 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMARCA1P28370 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SMARCA1P28370 AC093525.9-201ENST00000624961 1746 ntBASIC19.96■□□□□ 0.79
SMARCA1P28370 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SMARCA1P28370 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SMARCA1P28370 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.95■□□□□ 0.78
SMARCA1P28370 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.95■□□□□ 0.78
SMARCA1P28370 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.95■□□□□ 0.78
SMARCA1P28370 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.95■□□□□ 0.78
SMARCA1P28370 PTCHD3P3-201ENST00000403073 906 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 AC098831.1-202ENST00000438821 336 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 AC092910.1-201ENST00000482027 1129 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 RPS15P9-201ENST00000494093 319 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 IGHV3-65-201ENST00000523210 341 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 AC005593.1-201ENST00000624894 515 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 AF228730.7-201ENST00000641842 219 ntBASIC19.95■□□□□ 0.78
SMARCA1P28370 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.95■□□□□ 0.78
SMARCA1P28370 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.95■□□□□ 0.78
SMARCA1P28370 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMARCA1P28370 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
SMARCA1P28370 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.94■□□□□ 0.78
SMARCA1P28370 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
SMARCA1P28370 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SMARCA1P28370 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SMARCA1P28370 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 AL590627.1-203ENST00000421194 1026 ntBASIC19.94■□□□□ 0.78
SMARCA1P28370 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.94■□□□□ 0.78
SMARCA1P28370 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.94■□□□□ 0.78
SMARCA1P28370 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.94■□□□□ 0.78
SMARCA1P28370 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.94■□□□□ 0.78
SMARCA1P28370 AC117500.6-201ENST00000624871 588 ntBASIC19.94■□□□□ 0.78
SMARCA1P28370 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.94■□□□□ 0.78
SMARCA1P28370 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.94■□□□□ 0.78
SMARCA1P28370 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCA1P28370 CROCCP2-202ENST00000412962 2773 ntBASIC19.94■□□□□ 0.78
SMARCA1P28370 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCA1P28370 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SMARCA1P28370 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms