Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
APOEP02649 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.33■□□□□ 0.53
APOEP02649 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.33■□□□□ 0.53
APOEP02649 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
APOEP02649 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
APOEP02649 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.33■□□□□ 0.52
APOEP02649 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 SAPCD2P3-201ENST00000455031 850 ntBASIC18.33■□□□□ 0.52
APOEP02649 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.33■□□□□ 0.52
APOEP02649 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.33■□□□□ 0.52
APOEP02649 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
APOEP02649 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.33■□□□□ 0.52
APOEP02649 REXO1L6P-202ENST00000619970 1078 ntBASIC18.33■□□□□ 0.52
APOEP02649 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.33■□□□□ 0.52
APOEP02649 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.33■□□□□ 0.52
APOEP02649 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
APOEP02649 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.33■□□□□ 0.52
APOEP02649 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.33■□□□□ 0.52
APOEP02649 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.32■□□□□ 0.52
APOEP02649 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.32■□□□□ 0.52
APOEP02649 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
APOEP02649 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.32■□□□□ 0.52
APOEP02649 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.32■□□□□ 0.52
APOEP02649 FAAHP1-202ENST00000446499 1238 ntBASIC18.32■□□□□ 0.52
APOEP02649 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.32■□□□□ 0.52
APOEP02649 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.32■□□□□ 0.52
APOEP02649 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.32■□□□□ 0.52
APOEP02649 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.32■□□□□ 0.52
APOEP02649 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
APOEP02649 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
APOEP02649 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 ABCD1P5-201ENST00000445663 754 ntBASIC18.31■□□□□ 0.52
APOEP02649 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 EMBP1-201ENST00000458200 901 ntBASIC18.31■□□□□ 0.52
APOEP02649 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.31■□□□□ 0.52
APOEP02649 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.31■□□□□ 0.52
APOEP02649 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.31■□□□□ 0.52
APOEP02649 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
APOEP02649 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
APOEP02649 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.31■□□□□ 0.52
APOEP02649 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
APOEP02649 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms