Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.05□□□□□ -0.16
HOXA3O43365 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.05□□□□□ -0.16
HOXA3O43365 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 AC009949.1-201ENST00000623048 1830 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 NCF1C-201ENST00000438382 1427 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA3O43365 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA3O43365 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXA3O43365 BX276092.7-203ENST00000637198 1536 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 AC006504.4-201ENST00000592118 1568 ntBASIC14.05□□□□□ -0.16
HOXA3O43365 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
HOXA3O43365 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
HOXA3O43365 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXA3O43365 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.04□□□□□ -0.16
HOXA3O43365 AC112482.1-201ENST00000492080 688 ntBASIC14.04□□□□□ -0.16
HOXA3O43365 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 MIR4751-201ENST00000578027 74 ntBASIC14.04□□□□□ -0.16
HOXA3O43365 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXA3O43365 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA3O43365 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HOXA3O43365 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA3O43365 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 REXO1L9P-201ENST00000604264 2108 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 FER1L4-210ENST00000615531 5998 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXA3O43365 AC004832.2-201ENST00000426397 482 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 STK19B-204ENST00000512515 211 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 IGHV3-52-201ENST00000519770 353 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.03□□□□□ -0.16
HOXA3O43365 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXA3O43365 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXA3O43365 AC019129.2-201ENST00000609837 1235 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.03□□□□□ -0.16
HOXA3O43365 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.03□□□□□ -0.16
HOXA3O43365 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA3O43365 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HOXA3O43365 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms