Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.1■□□□□ 0.65
CLDN3O15551 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 MRPL3P1-201ENST00000400109 1033 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CLDN3O15551 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.1■□□□□ 0.65
CLDN3O15551 PRYP5-201ENST00000451909 266 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 BX005266.1-201ENST00000473402 457 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 AL662844.1-201ENST00000546340 181 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CLDN3O15551 AC021087.4-201ENST00000563761 564 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.1■□□□□ 0.65
CLDN3O15551 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 AC009336.1-201ENST00000608941 1553 ntBASIC19.1■□□□□ 0.65
CLDN3O15551 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.1■□□□□ 0.65
CLDN3O15551 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLDN3O15551 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLDN3O15551 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
CLDN3O15551 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
CLDN3O15551 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.09■□□□□ 0.65
CLDN3O15551 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 SIGLEC30P-201ENST00000455569 941 ntBASIC19.09■□□□□ 0.65
CLDN3O15551 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
CLDN3O15551 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.09■□□□□ 0.65
CLDN3O15551 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.09■□□□□ 0.65
CLDN3O15551 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.09■□□□□ 0.65
CLDN3O15551 SLC25A6P4-201ENST00000586535 553 ntBASIC19.09■□□□□ 0.65
CLDN3O15551 MTDHP4-201ENST00000600287 670 ntBASIC19.09■□□□□ 0.65
CLDN3O15551 AL022326.1-202ENST00000641533 845 ntBASIC19.09■□□□□ 0.65
CLDN3O15551 AC148477.5-201ENST00000625164 1645 ntBASIC19.09■□□□□ 0.65
CLDN3O15551 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CLDN3O15551 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLDN3O15551 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN3O15551 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.08■□□□□ 0.65
CLDN3O15551 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.08■□□□□ 0.65
CLDN3O15551 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN3O15551 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.08■□□□□ 0.65
CLDN3O15551 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.08■□□□□ 0.65
CLDN3O15551 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN3O15551 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
CLDN3O15551 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN3O15551 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CLDN3O15551 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLDN3O15551 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CLDN3O15551 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 AL773604.1-201ENST00000617417 272 ntBASIC19.08■□□□□ 0.64
CLDN3O15551 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLDN3O15551 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CLDN3O15551 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CLDN3O15551 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CLDN3O15551 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.07■□□□□ 0.64
CLDN3O15551 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CLDN3O15551 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN3O15551 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms