Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SNX9Q9Y5X1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 PRYP5-201ENST00000451909 266 ntBASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 RNA5SP419-201ENST00000515908 135 ntBASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 AC133963.1-201ENST00000504166 1679 ntBASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SNX9Q9Y5X1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX9Q9Y5X1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.58
SNX9Q9Y5X1 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 OR7E14P-202ENST00000530490 1290 ntBASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 AL049840.3-201ENST00000602669 611 ntBASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 AL139327.4-201ENST00000612362 153 ntBASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 FAM215A-202ENST00000632077 792 ntBASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SNX9Q9Y5X1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
SNX9Q9Y5X1 RPS2P28-201ENST00000314255 741 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms