Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 AC105020.1-201ENST00000435356 2205 ntBASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 AC092053.1-201ENST00000605787 1936 ntBASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
PCDHA3Q9Y5H8 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 AC122714.2-201ENST00000502787 707 ntBASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHA3Q9Y5H8 AL049757.1-201ENST00000616842 1596 ntBASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AL138831.2-201ENST00000606564 490 ntBASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 AC005915.1-201ENST00000624912 2018 ntBASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHA3Q9Y5H8 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms