Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC011676.5-201ENST00000624864 2660 ntBASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 FAM8A6P-201ENST00000407496 1135 ntBASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 DDX43P3-201ENST00000441064 443 ntBASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 AC005332.3-201ENST00000589904 676 ntBASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 AC116407.2-201ENST00000613639 860 ntBASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 AC083849.1-201ENST00000615227 514 ntBASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM56Q9BRZ2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 ARMC10P1-201ENST00000313754 855 ntBASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 AC068472.1-201ENST00000474589 881 ntBASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 NKILA-202ENST00000614771 2598 ntBASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 LYSMD4-203ENST00000378904 2122 ntBASIC17.86■□□□□ 0.45
TRIM56Q9BRZ2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 MTCL1P1-201ENST00000446207 792 ntBASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 LINC01311-201ENST00000565162 1445 ntBASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 GPR32P1-201ENST00000601788 811 ntBASIC17.85■□□□□ 0.45
TRIM56Q9BRZ2 AL390719.2-201ENST00000606993 987 ntBASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms