Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 AL596325.1-201ENST00000563991 1082 ntBASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 UXT-AS1-201ENST00000590504 1525 ntBASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM43Q96BQ3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM43Q96BQ3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 AC092580.3-201ENST00000430932 139 ntBASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 AC107918.2-201ENST00000530817 355 ntBASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 SPDYE22P-201ENST00000582158 798 ntBASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 AL358472.5-202ENST00000641448 1267 ntBASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 RNF165-205ENST00000588679 2904 ntBASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRIM43Q96BQ3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AIRN-201ENST00000601203 4374 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SPDYE7P-202ENST00000420373 878 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 IGHV3-62-201ENST00000520057 340 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AC069120.2-201ENST00000524091 540 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AC027307.3-201ENST00000594262 1100 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AL662799.1-202ENST00000614205 422 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 AL135999.2-201ENST00000622438 1686 ntBASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM43Q96BQ3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AC084121.4-201ENST00000641598 221 ntBASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AF228730.8-201ENST00000642140 221 ntBASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 AC073592.3-201ENST00000625118 1834 ntBASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM43Q96BQ3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms