Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.58■□□□□ 0.89
BRF1Q92994 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.58■□□□□ 0.89
BRF1Q92994 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.58■□□□□ 0.89
BRF1Q92994 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
BRF1Q92994 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.58■□□□□ 0.89
BRF1Q92994 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
BRF1Q92994 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.58■□□□□ 0.89
BRF1Q92994 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
BRF1Q92994 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.58■□□□□ 0.89
BRF1Q92994 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.58■□□□□ 0.89
BRF1Q92994 AC111152.3-201ENST00000569699 673 ntBASIC20.58■□□□□ 0.89
BRF1Q92994 STK25P1-201ENST00000585406 838 ntBASIC20.58■□□□□ 0.89
BRF1Q92994 AC099336.1-202ENST00000602961 463 ntBASIC20.58■□□□□ 0.89
BRF1Q92994 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
BRF1Q92994 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
BRF1Q92994 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.58■□□□□ 0.88
BRF1Q92994 AC016396.2-201ENST00000562575 1417 ntBASIC20.58■□□□□ 0.88
BRF1Q92994 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRF1Q92994 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRF1Q92994 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRF1Q92994 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BRF1Q92994 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.58■□□□□ 0.88
BRF1Q92994 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
BRF1Q92994 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BRF1Q92994 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.57■□□□□ 0.88
BRF1Q92994 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.57■□□□□ 0.88
BRF1Q92994 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.57■□□□□ 0.88
BRF1Q92994 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.57■□□□□ 0.88
BRF1Q92994 AC114341.1-201ENST00000618070 349 ntBASIC20.57■□□□□ 0.88
BRF1Q92994 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 AC046185.3-201ENST00000623228 1824 ntBASIC20.57■□□□□ 0.88
BRF1Q92994 AC009053.2-201ENST00000563701 2365 ntBASIC20.57■□□□□ 0.88
BRF1Q92994 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.57■□□□□ 0.88
BRF1Q92994 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.56■□□□□ 0.88
BRF1Q92994 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
BRF1Q92994 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.56■□□□□ 0.88
BRF1Q92994 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.56■□□□□ 0.88
BRF1Q92994 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 AC132938.5-201ENST00000624980 1813 ntBASIC20.56■□□□□ 0.88
BRF1Q92994 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.56■□□□□ 0.88
BRF1Q92994 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BRF1Q92994 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.56■□□□□ 0.88
BRF1Q92994 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.56■□□□□ 0.88
BRF1Q92994 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.56■□□□□ 0.88
BRF1Q92994 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.56■□□□□ 0.88
BRF1Q92994 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms