Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 AL139424.1-201ENST00000607572 797 ntBASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AC046185.3-201ENST00000623228 1824 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AKR1C7P-201ENST00000305623 895 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 KRT18P58-201ENST00000527480 1120 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SART3-203ENST00000546611 1184 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AC114341.1-201ENST00000618070 349 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 TP73-AS1-207ENST00000624167 988 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SAPCD2P3-201ENST00000455031 850 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AL591684.3-201ENST00000605187 298 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 AC073592.5-201ENST00000624854 528 ntBASIC17.79■□□□□ 0.44
SHROOM3Q8TF72 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 AC016396.2-201ENST00000562575 1417 ntBASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 COX5BP2-201ENST00000392354 334 ntBASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 AF238378.1-201ENST00000526806 358 ntBASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 AL139327.4-201ENST00000612362 153 ntBASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 AL139288.1-201ENST00000623748 933 ntBASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHROOM3Q8TF72 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.77■□□□□ 0.44
SHROOM3Q8TF72 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms