Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC097637.2-201ENST00000624096 1997 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 MYCLP1-201ENST00000372451 1075 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC005829.1-201ENST00000570002 483 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 MIR3197-201ENST00000582241 73 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC064836.3-201ENST00000607928 673 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDDC3Q8N4P3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 AC090340.1-201ENST00000620778 4980 ntBASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDDC3Q8N4P3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 ABALON-201ENST00000629058 1903 ntBASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDDC3Q8N4P3 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDDC3Q8N4P3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms