Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 AP003733.1-201ENST00000491725 852 ntBASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 AC112698.1-201ENST00000510299 916 ntBASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC50Q8IVM0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC50Q8IVM0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 AC117947.1-201ENST00000427448 529 ntBASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 KRT18P57-201ENST00000443599 1254 ntBASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 AL359075.1-203ENST00000462729 1002 ntBASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC50Q8IVM0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 AC011676.5-201ENST00000624864 2660 ntBASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 AC005521.1-201ENST00000393351 872 ntBASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 NFIC-211ENST00000641145 8399 ntBASIC18.5■□□□□ 0.55
CCDC50Q8IVM0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 IGHGP-201ENST00000390555 1178 ntBASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 AC012306.2-201ENST00000609350 630 ntBASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CCDC50Q8IVM0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms