Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.27■□□□□ 0.51
RFWD3Q6PCD5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MRPL3P1-201ENST00000400109 1033 ntBASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
RFWD3Q6PCD5 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 FGFR3P6-201ENST00000457012 610 ntBASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 AC122714.2-201ENST00000502787 707 ntBASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 HTR7P1-202ENST00000624664 4411 ntBASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.25■□□□□ 0.51
RFWD3Q6PCD5 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 RBM17P3-201ENST00000417687 1192 ntBASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 FAM197Y8-203ENST00000450145 560 ntBASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RFWD3Q6PCD5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms