Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 AL773604.1-201ENST00000617417 272 ntBASIC18.37■□□□□ 0.53
RNF43Q68DV7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.37■□□□□ 0.53
RNF43Q68DV7 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 KRT8P47-201ENST00000604727 1398 ntBASIC18.37■□□□□ 0.53
RNF43Q68DV7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF43Q68DV7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF43Q68DV7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 SLC25A1P1-201ENST00000528351 927 ntBASIC18.36■□□□□ 0.53
RNF43Q68DV7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 AL096828.2-201ENST00000567259 1965 ntBASIC18.36■□□□□ 0.53
RNF43Q68DV7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF43Q68DV7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF43Q68DV7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 PP12613-201ENST00000424958 2230 ntBASIC18.35■□□□□ 0.53
RNF43Q68DV7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 AL591684.3-201ENST00000605187 298 ntBASIC18.35■□□□□ 0.53
RNF43Q68DV7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
RNF43Q68DV7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF43Q68DV7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms