Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 HLA-J-201ENST00000462773 1622 ntBASIC21.12■□□□□ 0.97
VPS53Q5VIR6 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 AKR1C7P-201ENST00000305623 895 ntBASIC21.12■□□□□ 0.97
VPS53Q5VIR6 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 AC122714.2-201ENST00000502787 707 ntBASIC21.12■□□□□ 0.97
VPS53Q5VIR6 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS53Q5VIR6 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 KRT16P4-201ENST00000453883 522 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AC132008.2-207ENST00000454517 770 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AC091304.2-201ENST00000564639 760 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AL591684.3-201ENST00000605187 298 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 IFNL4P1-201ENST00000607083 540 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 AL121772.3-201ENST00000610840 674 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 LINC01451-201ENST00000623792 534 ntBASIC21.11■□□□□ 0.97
VPS53Q5VIR6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
VPS53Q5VIR6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS53Q5VIR6 KRT8P10-201ENST00000450021 1447 ntBASIC21.1■□□□□ 0.97
VPS53Q5VIR6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms