Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCNA1P78396 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.78■□□□□ 0.76
CCNA1P78396 ACTL9-202ENST00000612068 1252 ntBASIC19.78■□□□□ 0.76
CCNA1P78396 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CCNA1P78396 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.78■□□□□ 0.76
CCNA1P78396 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.78■□□□□ 0.76
CCNA1P78396 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCNA1P78396 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCNA1P78396 AL135999.2-201ENST00000622438 1686 ntBASIC19.78■□□□□ 0.76
CCNA1P78396 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCNA1P78396 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.77■□□□□ 0.76
CCNA1P78396 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.77■□□□□ 0.76
CCNA1P78396 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.77■□□□□ 0.76
CCNA1P78396 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.77■□□□□ 0.76
CCNA1P78396 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.77■□□□□ 0.76
CCNA1P78396 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.77■□□□□ 0.76
CCNA1P78396 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.77■□□□□ 0.76
CCNA1P78396 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.77■□□□□ 0.76
CCNA1P78396 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
CCNA1P78396 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.77■□□□□ 0.76
CCNA1P78396 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCNA1P78396 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.75
CCNA1P78396 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCNA1P78396 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCNA1P78396 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 FLJ13224-201ENST00000313737 1514 ntBASIC19.76■□□□□ 0.75
CCNA1P78396 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.76■□□□□ 0.75
CCNA1P78396 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.76■□□□□ 0.75
CCNA1P78396 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
CCNA1P78396 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.76■□□□□ 0.75
CCNA1P78396 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.76■□□□□ 0.75
CCNA1P78396 AC093512.1-201ENST00000617969 520 ntBASIC19.76■□□□□ 0.75
CCNA1P78396 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CCNA1P78396 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
CCNA1P78396 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CCNA1P78396 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 AC092919.2-201ENST00000623631 1645 ntBASIC19.76■□□□□ 0.75
CCNA1P78396 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCNA1P78396 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.76■□□□□ 0.75
CCNA1P78396 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.75■□□□□ 0.75
CCNA1P78396 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCNA1P78396 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCNA1P78396 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.75■□□□□ 0.75
CCNA1P78396 AL096865.1-201ENST00000606796 927 ntBASIC19.75■□□□□ 0.75
CCNA1P78396 LINC00628-201ENST00000628516 1289 ntBASIC19.75■□□□□ 0.75
CCNA1P78396 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCNA1P78396 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.75■□□□□ 0.75
CCNA1P78396 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.75■□□□□ 0.75
CCNA1P78396 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.75■□□□□ 0.75
CCNA1P78396 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCNA1P78396 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCNA1P78396 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCNA1P78396 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCNA1P78396 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms