Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.75■□□□□ 0.27
CLDN6P56747 AP000344.2-201ENST00000512987 629 ntBASIC16.75■□□□□ 0.27
CLDN6P56747 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLDN6P56747 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.75■□□□□ 0.27
CLDN6P56747 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.75■□□□□ 0.27
CLDN6P56747 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.75■□□□□ 0.27
CLDN6P56747 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.75■□□□□ 0.27
CLDN6P56747 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLDN6P56747 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.75■□□□□ 0.27
CLDN6P56747 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLDN6P56747 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLDN6P56747 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.75■□□□□ 0.27
CLDN6P56747 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLDN6P56747 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLDN6P56747 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
CLDN6P56747 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLDN6P56747 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLDN6P56747 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.74■□□□□ 0.27
CLDN6P56747 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CLDN6P56747 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CLDN6P56747 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.74■□□□□ 0.27
CLDN6P56747 RHOQP3-201ENST00000437982 621 ntBASIC16.74■□□□□ 0.27
CLDN6P56747 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 AL096865.1-201ENST00000606796 927 ntBASIC16.74■□□□□ 0.27
CLDN6P56747 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 AL513210.1-201ENST00000629608 234 ntBASIC16.74■□□□□ 0.27
CLDN6P56747 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CLDN6P56747 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.74■□□□□ 0.27
CLDN6P56747 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLDN6P56747 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.74■□□□□ 0.27
CLDN6P56747 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
CLDN6P56747 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 AC092474.2-201ENST00000424288 719 ntBASIC16.73■□□□□ 0.27
CLDN6P56747 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.73■□□□□ 0.27
CLDN6P56747 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.73■□□□□ 0.27
CLDN6P56747 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.73■□□□□ 0.27
CLDN6P56747 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.73■□□□□ 0.27
CLDN6P56747 STK19B-204ENST00000512515 211 ntBASIC16.73■□□□□ 0.27
CLDN6P56747 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.73■□□□□ 0.27
CLDN6P56747 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.27
CLDN6P56747 AC004835.2-201ENST00000603762 682 ntBASIC16.73■□□□□ 0.27
CLDN6P56747 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.73■□□□□ 0.27
CLDN6P56747 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.73■□□□□ 0.27
CLDN6P56747 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CLDN6P56747 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLDN6P56747 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CLDN6P56747 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.72■□□□□ 0.27
CLDN6P56747 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.72■□□□□ 0.27
CLDN6P56747 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLDN6P56747 LINC00982-205ENST00000420957 435 ntBASIC16.72■□□□□ 0.27
CLDN6P56747 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms