Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL4A4P53420 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 REXO1L11P-201ENST00000620964 1927 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 SPDYE11-202ENST00000450699 704 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 CXCL1P1-201ENST00000502804 216 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 SPDYE9P-201ENST00000570642 692 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 AC109462.3-201ENST00000573934 613 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 SPDYE10P-202ENST00000612005 668 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 SPDYE8P-202ENST00000612377 668 ntBASIC18.56■□□□□ 0.56
COL4A4P53420 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.56■□□□□ 0.56
COL4A4P53420 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A4P53420 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 AC009336.1-201ENST00000608941 1553 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 LINC00304-203ENST00000565008 1864 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 AL355306.1-201ENST00000415580 579 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.55■□□□□ 0.56
COL4A4P53420 AL513480.1-201ENST00000451731 511 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.55■□□□□ 0.56
COL4A4P53420 KRT8P48-201ENST00000515599 1220 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 AC112191.1-201ENST00000523689 701 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 DUX4L27-201ENST00000554796 1261 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 DUX4L17-201ENST00000557360 1267 ntBASIC18.55■□□□□ 0.56
COL4A4P53420 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.55■□□□□ 0.56
COL4A4P53420 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A4P53420 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
COL4A4P53420 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A4P53420 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A4P53420 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A4P53420 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 PTCHD3P3-201ENST00000403073 906 ntBASIC18.54■□□□□ 0.56
COL4A4P53420 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A4P53420 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A4P53420 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A4P53420 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.54■□□□□ 0.56
COL4A4P53420 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL4A4P53420 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A4P53420 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A4P53420 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A4P53420 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A4P53420 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A4P53420 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A4P53420 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL4A4P53420 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A4P53420 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A4P53420 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms