Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 SP100-208ENST00000427101 1922 ntTSL 2 BASIC24■■□□□ 1.43
MSH6P52701 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC24■■□□□ 1.43
MSH6P52701 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC24■■□□□ 1.43
MSH6P52701 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC24■■□□□ 1.43
MSH6P52701 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC24■■□□□ 1.43
MSH6P52701 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC24■■□□□ 1.43
MSH6P52701 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC24■■□□□ 1.43
MSH6P52701 CD7-202ENST00000578509 925 ntTSL 3 BASIC24■■□□□ 1.43
MSH6P52701 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC24■■□□□ 1.43
MSH6P52701 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH6P52701 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC23.99■■□□□ 1.43
MSH6P52701 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC23.99■■□□□ 1.43
MSH6P52701 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC23.99■■□□□ 1.43
MSH6P52701 AC116407.2-201ENST00000613639 860 ntBASIC23.99■■□□□ 1.43
MSH6P52701 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH6P52701 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH6P52701 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
MSH6P52701 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
MSH6P52701 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH6P52701 GNAS-203ENST00000306120 1878 ntBASIC23.98■■□□□ 1.43
MSH6P52701 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH6P52701 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC23.98■■□□□ 1.43
MSH6P52701 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 AC107918.2-201ENST00000530817 355 ntBASIC23.98■■□□□ 1.43
MSH6P52701 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC23.98■■□□□ 1.43
MSH6P52701 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC23.98■■□□□ 1.43
MSH6P52701 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH6P52701 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH6P52701 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
MSH6P52701 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH6P52701 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC23.97■■□□□ 1.43
MSH6P52701 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC23.97■■□□□ 1.43
MSH6P52701 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC23.97■■□□□ 1.43
MSH6P52701 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC23.97■■□□□ 1.43
MSH6P52701 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC23.97■■□□□ 1.43
MSH6P52701 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 AC004233.3-201ENST00000607794 1269 ntBASIC23.97■■□□□ 1.43
MSH6P52701 MIR6799-201ENST00000620297 69 ntBASIC23.97■■□□□ 1.43
MSH6P52701 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH6P52701 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.97■■□□□ 1.43
MSH6P52701 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
MSH6P52701 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
MSH6P52701 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC23.97■■□□□ 1.43
MSH6P52701 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC23.97■■□□□ 1.43
MSH6P52701 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH6P52701 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
MSH6P52701 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC23.96■■□□□ 1.43
MSH6P52701 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
MSH6P52701 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
MSH6P52701 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
MSH6P52701 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
MSH6P52701 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.96■■□□□ 1.43
MSH6P52701 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
MSH6P52701 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC23.96■■□□□ 1.43
MSH6P52701 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
MSH6P52701 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 AL606495.2-201ENST00000605867 535 ntBASIC23.96■■□□□ 1.43
MSH6P52701 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
MSH6P52701 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms