Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MTMR9LP-203ENST00000426597 1545 ntBASIC14.35□□□□□ -0.11
CDX1P47902 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CDX1P47902 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PP12613-201ENST00000424958 2230 ntBASIC14.34□□□□□ -0.11
CDX1P47902 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
CDX1P47902 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.34□□□□□ -0.11
CDX1P47902 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
CDX1P47902 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 HLA-F-220ENST00000434407 884 ntBASIC14.34□□□□□ -0.11
CDX1P47902 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.34□□□□□ -0.11
CDX1P47902 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
CDX1P47902 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.34□□□□□ -0.11
CDX1P47902 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.34□□□□□ -0.11
CDX1P47902 AL136038.4-201ENST00000603606 1261 ntBASIC14.34□□□□□ -0.11
CDX1P47902 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.34□□□□□ -0.11
CDX1P47902 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CDX1P47902 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
CDX1P47902 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CDX1P47902 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDX1P47902 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CDX1P47902 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CDX1P47902 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.33□□□□□ -0.11
CDX1P47902 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.33□□□□□ -0.11
CDX1P47902 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
CDX1P47902 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.11
CDX1P47902 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDX1P47902 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CDX1P47902 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDX1P47902 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDX1P47902 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDX1P47902 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDX1P47902 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CDX1P47902 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CDX1P47902 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.33□□□□□ -0.12
CDX1P47902 PVRIG2P-201ENST00000435460 978 ntBASIC14.33□□□□□ -0.12
CDX1P47902 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.33□□□□□ -0.12
CDX1P47902 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.33□□□□□ -0.12
CDX1P47902 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.33□□□□□ -0.12
CDX1P47902 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CDX1P47902 PCDHB17P-201ENST00000539533 2393 ntBASIC14.33□□□□□ -0.12
CDX1P47902 AL391807.1-203ENST00000604392 2365 ntBASIC14.33□□□□□ -0.12
CDX1P47902 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDX1P47902 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
CDX1P47902 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms