Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SOX3P41225 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SOX3P41225 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.5■□□□□ 0.23
SOX3P41225 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.5■□□□□ 0.23
SOX3P41225 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.5■□□□□ 0.23
SOX3P41225 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.5■□□□□ 0.23
SOX3P41225 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.5■□□□□ 0.23
SOX3P41225 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX3P41225 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SOX3P41225 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.49■□□□□ 0.23
SOX3P41225 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.49■□□□□ 0.23
SOX3P41225 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SOX3P41225 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 RN7SL510P-201ENST00000581311 263 ntBASIC16.49■□□□□ 0.23
SOX3P41225 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.49■□□□□ 0.23
SOX3P41225 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SOX3P41225 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
SOX3P41225 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SOX3P41225 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SOX3P41225 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.48■□□□□ 0.23
SOX3P41225 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 POM121L3P-201ENST00000419331 1163 ntBASIC16.48■□□□□ 0.23
SOX3P41225 TPM4P1-201ENST00000436100 807 ntBASIC16.48■□□□□ 0.23
SOX3P41225 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.48■□□□□ 0.23
SOX3P41225 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.48■□□□□ 0.23
SOX3P41225 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.48■□□□□ 0.23
SOX3P41225 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.48■□□□□ 0.23
SOX3P41225 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.48■□□□□ 0.23
SOX3P41225 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.48■□□□□ 0.23
SOX3P41225 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.48■□□□□ 0.23
SOX3P41225 LINC01711-201ENST00000598340 967 ntBASIC16.48■□□□□ 0.23
SOX3P41225 AL138831.2-201ENST00000606564 490 ntBASIC16.48■□□□□ 0.23
SOX3P41225 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SOX3P41225 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SOX3P41225 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms