Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 AC016396.2-201ENST00000562575 1417 ntBASIC16.74■□□□□ 0.27
MSX2P35548 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.74■□□□□ 0.27
MSX2P35548 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 KRT18P6-201ENST00000555540 1265 ntBASIC16.74■□□□□ 0.27
MSX2P35548 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.74■□□□□ 0.27
MSX2P35548 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 AC078925.2-201ENST00000624013 1973 ntBASIC16.74■□□□□ 0.27
MSX2P35548 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
MSX2P35548 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
MSX2P35548 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
MSX2P35548 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.74■□□□□ 0.27
MSX2P35548 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX2P35548 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
MSX2P35548 AC026691.1-201ENST00000602502 2017 ntBASIC16.74■□□□□ 0.27
MSX2P35548 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
MSX2P35548 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.73■□□□□ 0.27
MSX2P35548 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
MSX2P35548 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSX2P35548 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
MSX2P35548 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.72■□□□□ 0.27
MSX2P35548 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.72■□□□□ 0.27
MSX2P35548 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
MSX2P35548 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.72■□□□□ 0.27
MSX2P35548 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.72■□□□□ 0.27
MSX2P35548 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
MSX2P35548 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSX2P35548 TSPY26P-202ENST00000565928 3884 ntBASIC16.71■□□□□ 0.27
MSX2P35548 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
MSX2P35548 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms