Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
BDNFP23560 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 RPL13AP23-201ENST00000480739 586 ntBASIC18.44■□□□□ 0.54
BDNFP23560 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.44■□□□□ 0.54
BDNFP23560 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.44■□□□□ 0.54
BDNFP23560 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 AL589182.2-201ENST00000619332 1049 ntBASIC18.44■□□□□ 0.54
BDNFP23560 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
BDNFP23560 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.44■□□□□ 0.54
BDNFP23560 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.43■□□□□ 0.54
BDNFP23560 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 AC097637.2-201ENST00000624096 1997 ntBASIC18.43■□□□□ 0.54
BDNFP23560 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
BDNFP23560 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.43■□□□□ 0.54
BDNFP23560 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.43■□□□□ 0.54
BDNFP23560 IGHV3-22-201ENST00000520721 359 ntBASIC18.43■□□□□ 0.54
BDNFP23560 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.43■□□□□ 0.54
BDNFP23560 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
BDNFP23560 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.43■□□□□ 0.54
BDNFP23560 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
BDNFP23560 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
BDNFP23560 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.43■□□□□ 0.54
BDNFP23560 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
BDNFP23560 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BDNFP23560 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.42■□□□□ 0.54
BDNFP23560 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
BDNFP23560 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.42■□□□□ 0.54
BDNFP23560 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 AC006557.2-201ENST00000592985 1240 ntBASIC18.42■□□□□ 0.54
BDNFP23560 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.42■□□□□ 0.54
BDNFP23560 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.42■□□□□ 0.54
BDNFP23560 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
BDNFP23560 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.42■□□□□ 0.54
BDNFP23560 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.42■□□□□ 0.54
BDNFP23560 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BDNFP23560 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 NCF1C-201ENST00000438382 1427 ntBASIC18.41■□□□□ 0.54
BDNFP23560 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 LETM1P2-201ENST00000597330 2178 ntBASIC18.41■□□□□ 0.54
BDNFP23560 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.41■□□□□ 0.54
BDNFP23560 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
BDNFP23560 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
BDNFP23560 AC005332.8-201ENST00000622750 2735 ntBASIC18.41■□□□□ 0.54
BDNFP23560 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms