Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
CXCL1P09341 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 AL138781.1-201ENST00000566567 1274 ntBASIC13.6□□□□□ -0.23
CXCL1P09341 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CXCL1P09341 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC13.6□□□□□ -0.23
CXCL1P09341 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC13.6□□□□□ -0.23
CXCL1P09341 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CXCL1P09341 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CXCL1P09341 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.6□□□□□ -0.23
CXCL1P09341 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CXCL1P09341 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 AP002414.2-201ENST00000591780 3365 ntBASIC13.59□□□□□ -0.23
CXCL1P09341 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
CXCL1P09341 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 NCF1B-203ENST00000435988 1254 ntBASIC13.59□□□□□ -0.23
CXCL1P09341 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC13.59□□□□□ -0.23
CXCL1P09341 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.59□□□□□ -0.23
CXCL1P09341 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
CXCL1P09341 AL137784.2-201ENST00000607332 1000 ntBASIC13.59□□□□□ -0.23
CXCL1P09341 AC131212.4-201ENST00000623606 975 ntBASIC13.59□□□□□ -0.23
CXCL1P09341 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 RCC2P3-201ENST00000418112 1537 ntBASIC13.59□□□□□ -0.23
CXCL1P09341 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CXCL1P09341 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CXCL1P09341 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CXCL1P09341 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CXCL1P09341 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.58□□□□□ -0.23
CXCL1P09341 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CXCL1P09341 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CXCL1P09341 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CXCL1P09341 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CXCL1P09341 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.58□□□□□ -0.23
CXCL1P09341 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
CXCL1P09341 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.58□□□□□ -0.24
CXCL1P09341 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.58□□□□□ -0.24
CXCL1P09341 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CXCL1P09341 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
CXCL1P09341 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms