Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL845331.1-201ENST00000424978 1190 ntBASIC17.11■□□□□ 0.33
SIX3O95343 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.11■□□□□ 0.33
SIX3O95343 AC002558.1-201ENST00000488906 803 ntBASIC17.11■□□□□ 0.33
SIX3O95343 GUSBP12-201ENST00000513727 720 ntBASIC17.11■□□□□ 0.33
SIX3O95343 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.11■□□□□ 0.33
SIX3O95343 AL592071.1-201ENST00000611956 408 ntBASIC17.11■□□□□ 0.33
SIX3O95343 AC124864.1-201ENST00000623408 392 ntBASIC17.11■□□□□ 0.33
SIX3O95343 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SIX3O95343 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX3O95343 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX3O95343 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.11■□□□□ 0.33
SIX3O95343 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.11■□□□□ 0.33
SIX3O95343 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SIX3O95343 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SIX3O95343 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.11■□□□□ 0.33
SIX3O95343 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SIX3O95343 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SIX3O95343 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SIX3O95343 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SIX3O95343 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.1■□□□□ 0.33
SIX3O95343 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
SIX3O95343 TMPOP1-202ENST00000424642 1267 ntBASIC17.1■□□□□ 0.33
SIX3O95343 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.1■□□□□ 0.33
SIX3O95343 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.1■□□□□ 0.33
SIX3O95343 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.1■□□□□ 0.33
SIX3O95343 AC019129.2-201ENST00000609837 1235 ntBASIC17.1■□□□□ 0.33
SIX3O95343 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.1■□□□□ 0.33
SIX3O95343 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SIX3O95343 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SIX3O95343 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SIX3O95343 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SIX3O95343 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.09■□□□□ 0.33
SIX3O95343 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.09■□□□□ 0.33
SIX3O95343 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 AC011498.5-201ENST00000592027 486 ntBASIC17.09■□□□□ 0.33
SIX3O95343 AC005336.2-201ENST00000593183 939 ntBASIC17.09■□□□□ 0.33
SIX3O95343 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.09■□□□□ 0.33
SIX3O95343 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.09■□□□□ 0.33
SIX3O95343 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SIX3O95343 AC125634.1-201ENST00000438758 1403 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms