Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH4O15457 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH4O15457 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 AL138688.1-201ENST00000624851 1594 ntBASIC19.61■□□□□ 0.73
MSH4O15457 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSH4O15457 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH4O15457 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH4O15457 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.6■□□□□ 0.73
MSH4O15457 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.6■□□□□ 0.73
MSH4O15457 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.6■□□□□ 0.73
MSH4O15457 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.6■□□□□ 0.73
MSH4O15457 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.6■□□□□ 0.73
MSH4O15457 AC105339.3-201ENST00000560043 636 ntBASIC19.6■□□□□ 0.73
MSH4O15457 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
MSH4O15457 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
MSH4O15457 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH4O15457 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH4O15457 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
MSH4O15457 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSH4O15457 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 AC006504.4-201ENST00000592118 1568 ntBASIC19.59■□□□□ 0.73
MSH4O15457 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 AC093909.1-201ENST00000504731 1122 ntBASIC19.59■□□□□ 0.73
MSH4O15457 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 AL353135.1-201ENST00000606729 504 ntBASIC19.59■□□□□ 0.73
MSH4O15457 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.59■□□□□ 0.73
MSH4O15457 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
MSH4O15457 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MSH4O15457 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH4O15457 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MSH4O15457 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
MSH4O15457 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 IL9RP2-201ENST00000423948 1312 ntBASIC19.58■□□□□ 0.73
MSH4O15457 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
MSH4O15457 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.58■□□□□ 0.73
MSH4O15457 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.58■□□□□ 0.73
MSH4O15457 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH4O15457 PP12613-201ENST00000424958 2230 ntBASIC19.58■□□□□ 0.73
MSH4O15457 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.73
MSH4O15457 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.58■□□□□ 0.72
MSH4O15457 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 ACTG1P4-201ENST00000425123 1122 ntBASIC19.58■□□□□ 0.72
MSH4O15457 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.58■□□□□ 0.72
MSH4O15457 AC092910.1-201ENST00000482027 1129 ntBASIC19.58■□□□□ 0.72
MSH4O15457 AC006557.2-201ENST00000592985 1240 ntBASIC19.58■□□□□ 0.72
MSH4O15457 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
MSH4O15457 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
MSH4O15457 AL139424.1-201ENST00000607572 797 ntBASIC19.58■□□□□ 0.72
MSH4O15457 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
MSH4O15457 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH4O15457 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms