Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
SMKR1H3BMG3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SMKR1H3BMG3 RNF216P1-203ENST00000404404 2427 ntBASIC12.84□□□□□ -0.35
SMKR1H3BMG3 AC026691.1-201ENST00000602502 2017 ntBASIC12.84□□□□□ -0.35
SMKR1H3BMG3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 AC124016.1-201ENST00000609552 612 ntBASIC12.84□□□□□ -0.35
SMKR1H3BMG3 AL353708.3-201ENST00000610272 989 ntBASIC12.84□□□□□ -0.35
SMKR1H3BMG3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
SMKR1H3BMG3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.35
SMKR1H3BMG3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
SMKR1H3BMG3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
SMKR1H3BMG3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 HOXB1-202ENST00000577092 1414 ntBASIC12.83□□□□□ -0.36
SMKR1H3BMG3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 AC110285.5-201ENST00000611501 352 ntBASIC12.83□□□□□ -0.36
SMKR1H3BMG3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 PAUPAR-201ENST00000630360 2965 ntBASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 AC116353.5-201ENST00000638148 1699 ntBASIC12.83□□□□□ -0.36
SMKR1H3BMG3 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SMKR1H3BMG3 AC006449.5-201ENST00000610658 2098 ntBASIC12.82□□□□□ -0.36
SMKR1H3BMG3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SMKR1H3BMG3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms