Protein–RNA interactions for Protein: Q9N2K0

HERV-H_2q24.3 provirus ancestral Env polyprotein, humanhuman

Predictions only

Length 584 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q9N2K0 AC148477.6-201ENST00000623746 465 ntBASIC20.34■□□□□ 0.85
Q9N2K0 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
Q9N2K0 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.34■□□□□ 0.85
Q9N2K0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.34■□□□□ 0.85
Q9N2K0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Q9N2K0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Q9N2K0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Q9N2K0 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.33■□□□□ 0.85
Q9N2K0 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Q9N2K0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Q9N2K0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Q9N2K0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Q9N2K0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Q9N2K0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Q9N2K0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Q9N2K0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Q9N2K0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Q9N2K0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.31■□□□□ 0.84
Q9N2K0 DUX4L11-201ENST00000611504 1267 ntBASIC20.31■□□□□ 0.84
Q9N2K0 DUX4L12-201ENST00000614593 1267 ntBASIC20.31■□□□□ 0.84
Q9N2K0 DUX4L14-201ENST00000621227 1267 ntBASIC20.31■□□□□ 0.84
Q9N2K0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.3■□□□□ 0.84
Q9N2K0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.3■□□□□ 0.84
Q9N2K0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
Q9N2K0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.3■□□□□ 0.84
Q9N2K0 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Q9N2K0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.29■□□□□ 0.84
Q9N2K0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Q9N2K0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Q9N2K0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Q9N2K0 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.28■□□□□ 0.84
Q9N2K0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Q9N2K0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Q9N2K0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Q9N2K0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Q9N2K0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.27■□□□□ 0.84
Q9N2K0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.27■□□□□ 0.84
Q9N2K0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Q9N2K0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.26■□□□□ 0.83
Q9N2K0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Q9N2K0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 AL359258.2-201ENST00000564063 1566 ntBASIC20.25■□□□□ 0.83
Q9N2K0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Q9N2K0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.25■□□□□ 0.83
Q9N2K0 HLA-V-202ENST00000446817 847 ntBASIC20.25■□□□□ 0.83
Q9N2K0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Q9N2K0 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Q9N2K0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Q9N2K0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Q9N2K0 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Q9N2K0 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
Q9N2K0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Q9N2K0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.23■□□□□ 0.83
Q9N2K0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Q9N2K0 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.22■□□□□ 0.83
Q9N2K0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Q9N2K0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
Q9N2K0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Q9N2K0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Q9N2K0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
Q9N2K0 AL359504.2-201ENST00000605506 1601 ntBASIC20.22■□□□□ 0.83
Q9N2K0 AC093323.1-202ENST00000635031 2045 ntBASIC20.22■□□□□ 0.83
Q9N2K0 AC142381.3-201ENST00000568208 1670 ntBASIC20.22■□□□□ 0.83
Q9N2K0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Q9N2K0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Q9N2K0 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Q9N2K0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Q9N2K0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.21■□□□□ 0.83
Q9N2K0 AC096887.2-201ENST00000623443 1957 ntBASIC20.21■□□□□ 0.83
Q9N2K0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Q9N2K0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Q9N2K0 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Q9N2K0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.21■□□□□ 0.83
Q9N2K0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.21■□□□□ 0.83
Q9N2K0 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms